From Literature to Drug Repurposing & Target Identification
A complete knowledge graph pipeline from literature annotation to drug repurposing & target identification
Network Medicine Extension
Literature Annotation
This extension enables biomedical researchers to curate, annotate, and synchronize literature-derived findings. It is used to extract and standardize biomedical knowledge from literature.
BioMedGPS Data
Knowledge Graph Builder
A biomedical knowledge graph builder responsible for integrating data from literature annotation to build a large-scale structured knowledge graph. This is the key step connecting the original literature data to downstream analysis.
DGL-KE
Graph Neural Network Model
A high-performance, easy-to-use, and scalable large-scale knowledge graph embedding learning package. Using graph neural network technology to perform deep learning on the knowledge graph, providing a foundation for subsequent prediction analysis.
BioMedGPS Explainer
Prediction & Interpretation
A comprehensive drug repurposing and visualization toolkit based on network medicine, designed for biomedical research. Using the trained model to predict drug repurposing and provide detailed explanations and visualizations.
Network Medicine Platform
Online Platform
An online platform for drug repurposing and disease mechanism research based on knowledge graphs and graph neural networks. Integrates the results of all previous steps, providing a complete network medicine analysis service to users.